PathoBLAST TM

Pathogen Genome BLAST (NCBI BLAST v2.2.9)


  Input

Program: 

Choose organism:
Bacteria:
Virus:
Fungi:
NIH Categorized Agents:
CDC Categorized Agents:
Homo sapiens
Mus musculus
Rattus norvegicus


Enter any number of input sequences here in FASTA format


or upload a file:

Note that input from uploaded files will take precedence from input typed into the text area above.


Perform ungapped alignment
  Results in.fna format
Send reply to the email address 




  Advanced Options


Expect:        Filter query sequence

Query Genetic Codes (blastx only):

      Matrix           Gap existence cost     Per residue gap cost              Lambda ratio
Other advanced options:   


  Formatting Options



  NCBI-gi        Graphical Overview
Alignment view:      Descriptions:      Alignments:

 Show GIs in deflines

PathoBLAST has been run [3,363] times

Please email errors or comments to PathoGene Tech Support


A service of the RCE Region VI Computational Biology Group. Email errors or comments to PathoGene Tech Support
Copyright © 2003 UT Southwestern Medical Center and RCE Region VI Computational Biology Group. All rights reserved.

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